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The most common questions pregnant mothers who tested positive for MRSA have are: Can a MRSA staph infection cause miscarriage, can it lead to birth defects, and is there a risk it can be passed onto the baby? There is no evidence that MRSA can cause miscarriage or birth defects, but some of the antibiotics used to treat it are not safe during pregnancy and that limits treatment options. MRSA can be passed on, either during delivery or in the uterus, but it is rare.
It sounds like you have a complex situation on your hands. It's up to you whether you terminate but talk to you doctor about the MRSA risks if that is the deciding factor in this case.
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